IL_5T2A_105

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_105 not in the Motif Atlas

Geometric match to IL_5TBW_127

Geometric discrepancy: 0.1568

The information below is about IL_5TBW_127

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5T2A|1|A|A|1060
5T2A|1|A|G|1061
5T2A|1|A|A|1062
*
5T2A|1|A|U|1090
5T2A|1|A|A|1091
5T2A|1|A|U|1092

Current chains

Chain A

LSU-alpha

Nearby chains

Chain D

5S ribosomal RNA; 5S rRNA

Chain J

uL16

Chain s

uL18