IL_5T2A_116

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5T2A|1|A|U|1270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_116 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.1477

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5T2A|1|A|G|1269
5T2A|1|A|U|1270
5T2A|1|A|G|1271
*
5T2A|1|A|C|1358
5T2A|1|A|C|1359

Current chains

Chain A

LSU-alpha

Nearby chains

Chain D

5S ribosomal RNA; 5S rRNA

Chain G

Large subunit ribosomal RNA; LSU rRNA

Chain Q

eL20

Chain q

eL40

Chain w

uL6