IL_5T2A_120

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_120 not in the Motif Atlas

Geometric match to IL_3NJ7_003

Geometric discrepancy: 0.2601

The information below is about IL_3NJ7_003

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5T2A|1|A|U|1477
5T2A|1|A|A|1478
5T2A|1|A|G|1479
*
5T2A|1|A|C|1511
5T2A|1|A|C|1512
5T2A|1|A|G|1513

Current chains

Chain A

LSU-alpha

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain X

uL24

Chain a

eL28

Chain g

eL32

Chain p

uL4