IL_5T2A_122

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

5T2A|1|A|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_122 not in the Motif Atlas

Geometric match to IL_5TBW_024

Geometric discrepancy: 0.3594

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5T2A|1|A|G|1486
5T2A|1|A|C|1487
*
5T2A|1|A|G|1505
5T2A|1|A|A|1506
5T2A|1|A|U|1507

Current chains

Chain A

LSU-alpha

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain G

Large subunit ribosomal RNA; LSU rRNA

Chain g

eL32