IL_5T2A_125
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCAAC*GUAC
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|A|U|1621
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_125 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.1608
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|A|G|1607
5T2A|1|A|C|1608
5T2A|1|A|C|1609
5T2A|1|A|A|1610
5T2A|1|A|A|1611
5T2A|1|A|C|1612
*
5T2A|1|A|G|1620
5T2A|1|A|U|1621
5T2A|1|A|A|1622
5T2A|1|A|C|1623
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- uL22
- Chain R
- eL19
- Chain o
- eL39
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