IL_5T2A_127

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_127 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2878

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5T2A|1|A|C|1645
5T2A|1|A|A|1646
5T2A|1|A|C|1647
*
5T2A|1|A|G|1734
5T2A|1|A|G|1735
5T2A|1|A|G|1736

Current chains

Chain A

LSU-alpha

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain V

uL23

Chain c

uL2

Chain l

eL37