IL_5T2A_144

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

5T2A|1|B|G|389, 5T2A|1|B|A|390, 5T2A|1|B|U|392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|B|C|387
5T2A|1|B|U|388
5T2A|1|B|G|389
5T2A|1|B|A|390
5T2A|1|B|A|391
5T2A|1|B|U|392
5T2A|1|B|G|393
*
5T2A|1|B|C|418
5T2A|1|B|G|419
5T2A|1|B|C|420
5T2A|1|B|G|421

Current chains

Chain B

LSU-beta

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain c

uL2