IL_5T2A_154
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAGA*UUGUU
- Length
- 12 nucleotides
- Bulged bases
- 5T2A|1|B|G|705, 5T2A|1|B|A|707, 5T2A|1|B|G|708, 5T2A|1|B|U|946, 5T2A|1|B|G|947, 5T2A|1|B|U|948
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_154 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2442
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|B|A|703
5T2A|1|B|U|704
5T2A|1|B|G|705
5T2A|1|B|A|706
5T2A|1|B|A|707
5T2A|1|B|G|708
5T2A|1|B|A|709
*
5T2A|1|B|U|945
5T2A|1|B|U|946
5T2A|1|B|G|947
5T2A|1|B|U|948
5T2A|1|B|U|949
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain V
- uL23
- Chain c
- uL2
- Chain v
- eL8
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