IL_5T2A_155
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAUGGGCGUGCUGUAAACUGAACCAAC*GGAG
- Length
- 33 nucleotides
- Bulged bases
- 5T2A|1|B|U|716, 5T2A|1|B|U|741, 5T2A|1|B|G|742, 5T2A|1|B|U|903
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|B|C|712
5T2A|1|B|C|713
5T2A|1|B|A|714
5T2A|1|B|A|715
5T2A|1|B|U|716
5T2A|1|B|G|717
5T2A|1|B|G|718
5T2A|1|B|G|719
5T2A|1|B|C|736
5T2A|1|B|G|737
5T2A|1|B|U|738
5T2A|1|B|G|739
5T2A|1|B|C|740
5T2A|1|B|U|741
5T2A|1|B|G|742
5T2A|1|B|U|743
5T2A|1|B|A|899
5T2A|1|B|A|900
5T2A|1|B|A|901
5T2A|1|B|C|902
5T2A|1|B|U|903
5T2A|1|B|G|904
5T2A|1|B|A|905
5T2A|1|B|A|906
5T2A|1|B|C|907
5T2A|1|B|C|908
5T2A|1|B|A|909
5T2A|1|B|A|910
5T2A|1|B|C|911
*
5T2A|1|B|G|939
5T2A|1|B|G|940
5T2A|1|B|A|941
5T2A|1|B|G|942
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- srRNA1
- Chain Y
- eL27
- Chain c
- uL2
- Chain e
- eL30
- Chain h
- eL34
- Chain m
- eL43
- Chain v
- eL8
Coloring options: