IL_5T2A_160

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGAAUAGGAAAU*AC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|B|G|1134
5T2A|1|B|A|1135
5T2A|1|B|A|1136
5T2A|1|B|G|1137
5T2A|1|B|A|1138
5T2A|1|B|A|1139
5T2A|1|B|U|1140
5T2A|1|B|A|1141
5T2A|1|B|G|1142
5T2A|1|B|G|1143
5T2A|1|B|A|1144
5T2A|1|B|A|1145
5T2A|1|B|A|1146
5T2A|1|B|U|1147
*
5T2A|1|B|A|1161
5T2A|1|B|C|1162

Current chains

Chain B

LSU-beta

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain I

eL18

Chain L

eL13

Chain Z

uL15

Chain r

eL42