IL_5T2A_169
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 5T2A|1|B|A|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_169 not in the Motif Atlas
- Homologous match to IL_5TBW_111
- Geometric discrepancy: 0.2057
- The information below is about IL_5TBW_111
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_95601.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
5T2A|1|B|U|1265
5T2A|1|B|A|1266
*
5T2A|1|B|U|1283
5T2A|1|B|A|1284
5T2A|1|B|A|1285
5T2A|1|B|G|1286
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- uL13
- Chain q
- eL40
- Chain w
- uL6
Coloring options: