IL_5T2A_175

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGAAG*CCAUCC

Length

12 nucleotides

Bulged bases

5T2A|1|C|A|215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|C|G|212
5T2A|1|C|A|213
5T2A|1|C|G|214
5T2A|1|C|A|215
5T2A|1|C|A|216
5T2A|1|C|G|217
*
5T2A|1|C|C|228
5T2A|1|C|C|229
5T2A|1|C|A|230
5T2A|1|C|U|231
5T2A|1|C|C|232
5T2A|1|C|C|233

Current chains

Chain C

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain V

uL23