IL_5T2A_180

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCCC*GAUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_180 not in the Motif Atlas

Geometric match to IL_5TBW_376

Geometric discrepancy: 0.2057

The information below is about IL_5TBW_376

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.9

Basepair signature

cWW-cSH-cWS-tSW-L-R-cWW-R

Number of instances in this motif group

9

Unit IDs

5T2A|1|D|A|33
5T2A|1|D|U|34
5T2A|1|D|C|35
5T2A|1|D|C|36
5T2A|1|D|C|37
*
5T2A|1|D|G|42
5T2A|1|D|A|43
5T2A|1|D|U|44
5T2A|1|D|U|45
5T2A|1|D|U|46

Current chains

Chain D

5S rRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain K

uL5

Chain s

uL18