IL_5T2A_188
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CG*CGCCAAGUAUAUUCAUGAUCACAAG
- Length
- 27 nucleotides
- Bulged bases
- 5T2A|1|F|C|49, 5T2A|1|F|A|51, 5T2A|1|F|A|60, 5T2A|1|F|U|64, 5T2A|1|F|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|F|C|10
5T2A|1|F|G|11
*
5T2A|1|F|C|46
5T2A|1|F|G|47
5T2A|1|F|C|48
5T2A|1|F|C|49
5T2A|1|F|A|50
5T2A|1|F|A|51
5T2A|1|F|G|52
5T2A|1|F|U|53
5T2A|1|F|A|54
5T2A|1|F|U|55
5T2A|1|F|A|56
5T2A|1|F|U|57
5T2A|1|F|U|58
5T2A|1|F|C|59
5T2A|1|F|A|60
5T2A|1|F|U|61
5T2A|1|F|G|62
5T2A|1|F|A|63
5T2A|1|F|U|64
5T2A|1|F|C|65
5T2A|1|F|A|66
5T2A|1|F|C|67
5T2A|1|F|A|68
5T2A|1|F|A|69
5T2A|1|F|G|70
Current chains
- Chain F
- srRNA3
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- uL13
- Chain N
- eL14
- Chain Q
- eL20
- Chain j
- eL33
- Chain t
- eL6
Coloring options: