IL_5T2A_195
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UU*AGUG
- Length
- 6 nucleotides
- Bulged bases
- 5T2A|1|G|G|106, 5T2A|1|G|U|107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_195 not in the Motif Atlas
- Homologous match to IL_5TBW_119
- Geometric discrepancy: 0.2331
- The information below is about IL_5TBW_119
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_24807.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5T2A|1|G|U|91
5T2A|1|G|U|92
*
5T2A|1|G|A|105
5T2A|1|G|G|106
5T2A|1|G|U|107
5T2A|1|G|G|108
Current chains
- Chain G
- srRNA2
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- srRNA4
- Chain R
- eL19
- Chain f
- eL31
Coloring options: