IL_5T2A_197

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_197 not in the Motif Atlas

Geometric match to IL_4KZD_006

Geometric discrepancy: 0.1148

The information below is about IL_4KZD_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

5T2A|1|H|G|29
5T2A|1|H|G|30
*
5T2A|1|H|C|106
5T2A|1|H|U|107
5T2A|1|H|C|115

Current chains

Chain H

srRNA4

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain d

uL3

Chain f

eL31