IL_5T2A_198
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CUUGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_198 not in the Motif Atlas
- Geometric match to IL_4PKD_001
- Geometric discrepancy: 0.161
- The information below is about IL_4PKD_001
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
5T2A|1|H|C|32
5T2A|1|H|U|33
5T2A|1|H|G|34
*
5T2A|1|H|C|98
5T2A|1|H|U|99
5T2A|1|H|U|100
5T2A|1|H|G|101
5T2A|1|H|A|102
5T2A|1|H|G|103
5T2A|1|H|G|104
Current chains
- Chain H
- srRNA4
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- eL24
- Chain d
- uL3
- Chain f
- eL31
Coloring options: