IL_5T2A_201
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_201 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.1288
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
5T2A|1|H|C|67
5T2A|1|H|G|68
5T2A|1|H|A|69
5T2A|1|H|G|70
*
5T2A|1|H|C|85
5T2A|1|H|G|86
5T2A|1|H|A|87
5T2A|1|H|G|88
Current chains
- Chain H
- srRNA4
Nearby chains
- Chain 5
- eS8
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- eL19
- Chain T
- eL22
Coloring options: