IL_5T2A_204

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGG*CCAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_204 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3844

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5T2A|1|2|U|596
5T2A|1|2|G|597
5T2A|1|2|G|598
*
5T2A|1|2|C|638
5T2A|1|2|C|639
5T2A|1|2|A|640
5T2A|1|2|A|641

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 6

uS4

Chain AS

uS12

Chain AY

eS30