IL_5T2A_205

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGGACAAGUC*GCUC

Length

15 nucleotides

Bulged bases

5T2A|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|G|598
5T2A|1|2|A|599
5T2A|1|2|G|600
5T2A|1|2|G|601
5T2A|1|2|A|602
5T2A|1|2|C|603
5T2A|1|2|A|604
5T2A|1|2|A|605
5T2A|1|2|G|606
5T2A|1|2|U|607
5T2A|1|2|C|608
*
5T2A|1|2|G|635
5T2A|1|2|C|636
5T2A|1|2|U|637
5T2A|1|2|C|638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 6

uS4

Chain AP

uS5

Chain AS

uS12

Chain AX

uS3

Chain AY

eS30