IL_5T2A_207

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CCU

Length

5 nucleotides

Bulged bases

5T2A|1|2|C|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_207 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.3628

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5T2A|1|2|G|1114
5T2A|1|2|G|1115
*
5T2A|1|2|C|1205
5T2A|1|2|C|1206
5T2A|1|2|U|1207

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 4

eS7

Chain AG

uS15

Chain AW

eS27