IL_5T2A_216

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCGAACUU*AUUACUCAGC

Length

19 nucleotides

Bulged bases

5T2A|1|A|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|A|G|28
5T2A|1|A|C|29
5T2A|1|A|C|30
5T2A|1|A|G|31
5T2A|1|A|A|32
5T2A|1|A|A|33
5T2A|1|A|C|34
5T2A|1|A|U|35
5T2A|1|A|U|36
*
5T2A|1|A|A|43
5T2A|1|A|U|44
5T2A|1|A|U|45
5T2A|1|A|A|46
5T2A|1|A|C|47
5T2A|1|A|U|48
5T2A|1|A|C|49
5T2A|1|A|A|50
5T2A|1|A|G|51
5T2A|1|A|C|52

Current chains

Chain A

LSU-alpha

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain L

eL13

Chain O

eL15

Chain Z

uL15

Chain l

eL37

Chain r

eL42