IL_5T2A_217
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAU*AGUUGUG
- Length
- 12 nucleotides
- Bulged bases
- 5T2A|1|A|U|146
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_217 not in the Motif Atlas
- Geometric match to IL_4V9F_108
- Geometric discrepancy: 0.3796
- The information below is about IL_4V9F_108
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|A|C|119
5T2A|1|A|G|120
5T2A|1|A|A|121
5T2A|1|A|A|122
5T2A|1|A|U|123
*
5T2A|1|A|A|143
5T2A|1|A|G|144
5T2A|1|A|U|145
5T2A|1|A|U|146
5T2A|1|A|G|147
5T2A|1|A|U|148
5T2A|1|A|G|149
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain O
- eL15
- Chain i
- uL29
- Chain v
- eL8
Coloring options: