IL_5T2A_218
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUA*UAUUU
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|C|U|123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_218 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.288
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
5T2A|1|A|A|369
5T2A|1|A|G|370
5T2A|1|A|U|371
5T2A|1|A|A|372
*
5T2A|1|C|U|121
5T2A|1|C|A|122
5T2A|1|C|U|123
5T2A|1|C|U|124
5T2A|1|C|U|125
Current chains
- Chain A
- LSU-alpha
- Chain C
- 5.8S rRNA
Nearby chains
- Chain L
- eL13
- Chain i
- uL29
- Chain l
- eL37
- Chain p
- uL4
Coloring options: