IL_5T2A_219

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACC*GGC

Length

7 nucleotides

Bulged bases

5T2A|1|A|A|378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_219 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2662

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5T2A|1|A|G|377
5T2A|1|A|A|378
5T2A|1|A|C|379
5T2A|1|A|C|380
*
5T2A|1|C|G|114
5T2A|1|C|G|115
5T2A|1|C|C|116

Current chains

Chain A

LSU-alpha

Chain C

5.8S rRNA

Nearby chains

Chain X

uL24

Chain p

uL4