IL_5T2C_022

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCCG*CGGC

Length

10 nucleotides

Bulged bases

5T2C|1|A|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_022 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.289

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5T2C|1|A|G|482
5T2C|1|A|G|483
5T2C|1|A|U|484
5T2C|1|A|C|485
5T2C|1|A|C|486
5T2C|1|A|G|487
*
5T2C|1|A|C|669
5T2C|1|A|G|670
5T2C|1|A|G|671
5T2C|1|A|C|672

Current chains

Chain A

28S rRNA

Nearby chains

Chain k

60S ribosomal protein L28