IL_5T2C_032

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGG*CCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_032 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.3437

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5T2C|1|A|C|737
5T2C|1|A|C|738
5T2C|1|A|G|739
5T2C|1|A|G|740
*
5T2C|1|A|C|924
5T2C|1|A|C|925
5T2C|1|A|G|926

Current chains

Chain A

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L18a

Chain s

60S ribosomal protein L14