IL_5T2C_048

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

5T2C|1|A|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_048 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.2234

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5T2C|1|A|G|1550
5T2C|1|A|C|1551
*
5T2C|1|A|G|1576
5T2C|1|A|G|1577
5T2C|1|A|U|1578

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain L

60S ribosomal protein L19

Chain j

60S ribosomal protein L37a