IL_5T2C_056
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_056 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.215
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2C|1|A|C|1732
5T2C|1|A|G|1733
5T2C|1|A|G|1734
5T2C|1|A|U|1735
5T2C|1|A|A|1736
5T2C|1|A|A|1737
*
5T2C|1|A|U|1792
5T2C|1|A|A|1793
5T2C|1|A|A|1794
5T2C|1|A|A|1795
5T2C|1|A|U|1796
5T2C|1|A|G|1797
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 60S ribosomal protein L21
- Chain m
- 60S ribosomal protein L7
- Chain p
- 60S ribosomal protein L10-like
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