IL_5T2C_067
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 5T2C|1|A|U|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_067 not in the Motif Atlas
- Homologous match to IL_8C3A_056
- Geometric discrepancy: 0.3435
- The information below is about IL_8C3A_056
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
5T2C|1|A|G|1946
5T2C|1|A|U|1947
5T2C|1|A|G|1948
*
5T2C|1|A|C|2035
5T2C|1|A|C|2036
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 60S ribosomal protein L18a
- Chain g
- Ubiquitin-60S ribosomal protein L40
- Chain o
- 60S ribosomal protein L9
Coloring options: