IL_5T2C_078

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_078 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2259

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5T2C|1|A|G|2542
5T2C|1|A|A|2543
5T2C|1|A|G|2544
5T2C|1|A|U|2545
5T2C|1|A|G|2546
5T2C|1|A|G|2547
*
5T2C|1|A|C|2772
5T2C|1|A|G|2773
5T2C|1|A|C|2774

Current chains

Chain A

28S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain e

60S ribosomal protein L38