IL_5T2C_120

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

5T2C|1|A|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_120 not in the Motif Atlas

Homologous match to IL_8GLP_150

Geometric discrepancy: 0.1182

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

5T2C|1|A|U|4468
5T2C|1|A|U|4469
5T2C|1|A|G|4470
*
5T2C|1|A|C|4485
5T2C|1|A|C|4486
5T2C|1|A|A|4487
5T2C|1|A|A|4488
5T2C|1|A|G|4489

Current chains

Chain A

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L13a

Chain g

Ubiquitin-60S ribosomal protein L40

Chain o

60S ribosomal protein L9