IL_5T2C_124

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

5T2C|1|A|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_124 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3218

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5T2C|1|A|C|4582
5T2C|1|A|C|4583
5T2C|1|A|A|4584
5T2C|1|A|U|4585
*
5T2C|1|A|A|4717
5T2C|1|A|G|4718
5T2C|1|A|G|4719
5T2C|1|A|C|4720
5T2C|1|A|G|4721

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain I

60S ribosomal protein L13a