IL_5T2C_130

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*CAAUG

Length

8 nucleotides

Bulged bases

5T2C|1|A|A|4656, 5T2C|1|A|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_130 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2158

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5T2C|1|A|U|4641
5T2C|1|A|U|4642
5T2C|1|A|G|4643
*
5T2C|1|A|C|4654
5T2C|1|A|A|4655
5T2C|1|A|A|4656
5T2C|1|A|U|4657
5T2C|1|A|G|4658

Current chains

Chain A

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L19

Chain X

60S ribosomal protein L31