IL_5T2C_162

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUACAG*CCUGUAAUUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|C|527
5T2C|1|AA|A|528
5T2C|1|AA|A|529
5T2C|1|AA|U|530
5T2C|1|AA|A|531
5T2C|1|AA|C|532
5T2C|1|AA|A|533
5T2C|1|AA|G|534
*
5T2C|1|AA|C|549
5T2C|1|AA|C|550
5T2C|1|AA|U|551
5T2C|1|AA|G|552
5T2C|1|AA|U|553
5T2C|1|AA|A|554
5T2C|1|AA|A|555
5T2C|1|AA|U|556
5T2C|1|AA|U|557
5T2C|1|AA|G|558

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein S9

Chain AT

40S ribosomal protein S30