IL_5T2C_163

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGGGCAAGUC*GCUC

Length

15 nucleotides

Bulged bases

5T2C|1|AA|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|598
5T2C|1|AA|A|599
5T2C|1|AA|G|600
5T2C|1|AA|G|601
5T2C|1|AA|G|602
5T2C|1|AA|C|603
5T2C|1|AA|A|604
5T2C|1|AA|A|605
5T2C|1|AA|G|606
5T2C|1|AA|U|607
5T2C|1|AA|C|608
*
5T2C|1|AA|G|635
5T2C|1|AA|C|636
5T2C|1|AA|U|637
5T2C|1|AA|C|638

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S23

Chain AJ

40S ribosomal protein S2

Chain AL

40S ribosomal protein S9

Chain AT

40S ribosomal protein S30

Chain Aq

40S ribosomal protein S3