IL_5T2C_167
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUAGU*AUCAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_167 not in the Motif Atlas
- Geometric match to IL_8ZA4_001
- Geometric discrepancy: 0.3034
- The information below is about IL_8ZA4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5T2C|1|AA|C|676
5T2C|1|AA|G|677
5T2C|1|AA|U|678
5T2C|1|AA|A|679
5T2C|1|AA|G|680
5T2C|1|AA|U|681
*
5T2C|1|AA|A|1024
5T2C|1|AA|U|1025
5T2C|1|AA|C|1026
5T2C|1|AA|A|1027
5T2C|1|AA|A|1028
5T2C|1|AA|G|1029
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 40S ribosomal protein S23
- Chain AN
- 40S ribosomal protein S13
- Chain AP
- 40S ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S11
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