IL_5T2C_174
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCGCUAG*CUUGGACCGG
- Length
- 17 nucleotides
- Bulged bases
- 5T2C|1|AA|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_174 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3217
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5T2C|1|AA|C|950
5T2C|1|AA|C|951
5T2C|1|AA|G|952
5T2C|1|AA|C|953
5T2C|1|AA|U|954
5T2C|1|AA|A|955
5T2C|1|AA|G|956
*
5T2C|1|AA|C|967
5T2C|1|AA|U|968
5T2C|1|AA|U|969
5T2C|1|AA|G|970
5T2C|1|AA|G|971
5T2C|1|AA|A|972
5T2C|1|AA|C|973
5T2C|1|AA|C|974
5T2C|1|AA|G|975
5T2C|1|AA|G|976
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 40S ribosomal protein S14
- Chain Ap
- 40S ribosomal protein S3a
Coloring options: