IL_5T2C_176
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAGA*UCGUAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_176 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.3132
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5T2C|1|AA|C|1047
5T2C|1|AA|G|1048
5T2C|1|AA|A|1049
5T2C|1|AA|A|1050
5T2C|1|AA|G|1051
5T2C|1|AA|A|1052
*
5T2C|1|AA|U|1066
5T2C|1|AA|C|1067
5T2C|1|AA|G|1068
5T2C|1|AA|U|1069
5T2C|1|AA|A|1070
5T2C|1|AA|G|1071
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AE
- 40S ribosomal protein S26
- Chain AO
- 40S ribosomal protein S14
- Chain D
- 60S ribosomal protein L8
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