IL_5T2C_184

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUG*UUAGAUGUC

Length

64 nucleotides

Bulged bases

5T2C|1|AA|G|1274, 5T2C|1|AA|G|1285, 5T2C|1|AA|C|1292, 5T2C|1|AA|A|1293, 5T2C|1|AA|U|1300, 5T2C|1|AA|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|1270
5T2C|1|AA|C|1271
5T2C|1|AA|C|1272
5T2C|1|AA|C|1273
5T2C|1|AA|G|1274
5T2C|1|AA|G|1275
5T2C|1|AA|A|1276
5T2C|1|AA|C|1277
5T2C|1|AA|A|1278
5T2C|1|AA|C|1279
5T2C|1|AA|G|1280
5T2C|1|AA|G|1281
5T2C|1|AA|A|1282
5T2C|1|AA|C|1283
5T2C|1|AA|A|1284
5T2C|1|AA|G|1285
5T2C|1|AA|G|1286
5T2C|1|AA|A|1287
5T2C|1|AA|U|1288
5T2C|1|AA|U|1289
5T2C|1|AA|G|1290
5T2C|1|AA|A|1291
5T2C|1|AA|C|1292
5T2C|1|AA|A|1293
5T2C|1|AA|G|1294
5T2C|1|AA|A|1295
5T2C|1|AA|U|1296
5T2C|1|AA|U|1297
5T2C|1|AA|G|1298
5T2C|1|AA|A|1299
5T2C|1|AA|U|1300
5T2C|1|AA|A|1301
5T2C|1|AA|G|1302
5T2C|1|AA|C|1303
5T2C|1|AA|U|1304
5T2C|1|AA|C|1305
5T2C|1|AA|U|1306
5T2C|1|AA|U|1307
5T2C|1|AA|U|1308
5T2C|1|AA|C|1309
5T2C|1|AA|U|1310
5T2C|1|AA|C|1311
5T2C|1|AA|G|1312
5T2C|1|AA|A|1313
5T2C|1|AA|U|1314
5T2C|1|AA|U|1315
5T2C|1|AA|C|1316
5T2C|1|AA|C|1317
5T2C|1|AA|G|1318
5T2C|1|AA|U|1319
5T2C|1|AA|G|1320
5T2C|1|AA|G|1321
5T2C|1|AA|G|1322
5T2C|1|AA|U|1323
5T2C|1|AA|G|1324
*
5T2C|1|AA|U|1504
5T2C|1|AA|U|1505
5T2C|1|AA|A|1506
5T2C|1|AA|G|1507
5T2C|1|AA|A|1508
5T2C|1|AA|U|1509
5T2C|1|AA|G|1510
5T2C|1|AA|U|1511
5T2C|1|AA|C|1512

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S29

Chain AH

Ubiquitin-40S ribosomal protein S27a

Chain AM

40S ribosomal protein S12

Chain Av

40S ribosomal protein S10

Chain Ax

40S ribosomal protein S15