IL_5T2C_185

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGUGCAUGG*UCUGUGAUGCCC

Length

23 nucleotides

Bulged bases

5T2C|1|AA|C|1331, 5T2C|1|AA|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|1325
5T2C|1|AA|U|1326
5T2C|1|AA|G|1327
5T2C|1|AA|G|1328
5T2C|1|AA|U|1329
5T2C|1|AA|G|1330
5T2C|1|AA|C|1331
5T2C|1|AA|A|1332
5T2C|1|AA|U|1333
5T2C|1|AA|G|1334
5T2C|1|AA|G|1335
*
5T2C|1|AA|U|1492
5T2C|1|AA|C|1493
5T2C|1|AA|U|1494
5T2C|1|AA|G|1495
5T2C|1|AA|U|1496
5T2C|1|AA|G|1497
5T2C|1|AA|A|1498
5T2C|1|AA|U|1499
5T2C|1|AA|G|1500
5T2C|1|AA|C|1501
5T2C|1|AA|C|1502
5T2C|1|AA|C|1503

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AB

40S ribosomal protein S20

Chain AG

40S ribosomal protein S29

Chain AH

Ubiquitin-40S ribosomal protein S27a

Chain Aq

40S ribosomal protein S3

Chain Av

40S ribosomal protein S10