IL_5T2C_187
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_187 not in the Motif Atlas
- Geometric match to IL_361D_001
- Geometric discrepancy: 0.3269
- The information below is about IL_361D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
5T2C|1|AA|U|1346
5T2C|1|AA|U|1347
5T2C|1|AA|G|1348
5T2C|1|AA|G|1349
*
5T2C|1|AA|C|1380
5T2C|1|AA|G|1381
5T2C|1|AA|A|1382
5T2C|1|AA|A|1383
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AJ
- 40S ribosomal protein S2
- Chain Ao
- 40S ribosomal protein SA
- Chain Aq
- 40S ribosomal protein S3
- Chain Az
- 40S ribosomal protein S17
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