IL_5T2C_216

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

5T2C|1|A|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_216 not in the Motif Atlas

Geometric match to IL_5TBW_060

Geometric discrepancy: 0.35

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5T2C|1|A|G|508
5T2C|1|A|A|509
5T2C|1|A|U|510
*
5T2C|1|A|A|649
5T2C|1|A|C|650

Current chains

Chain A

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L27a

Chain r

60S ribosomal protein L13