IL_5T2C_236

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUGGUUCCUUUG*CAUUCGAACG

Length

23 nucleotides

Bulged bases

5T2C|1|AA|G|113, 5T2C|1|AA|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|U|110
5T2C|1|AA|A|111
5T2C|1|AA|U|112
5T2C|1|AA|G|113
5T2C|1|AA|G|114
5T2C|1|AA|U|115
5T2C|1|AA|U|116
5T2C|1|AA|C|117
5T2C|1|AA|C|118
5T2C|1|AA|U|119
5T2C|1|AA|U|120
5T2C|1|AA|U|121
5T2C|1|AA|G|122
*
5T2C|1|AA|C|342
5T2C|1|AA|A|343
5T2C|1|AA|U|344
5T2C|1|AA|U|345
5T2C|1|AA|C|346
5T2C|1|AA|G|347
5T2C|1|AA|A|348
5T2C|1|AA|A|349
5T2C|1|AA|C|350
5T2C|1|AA|G|351

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S6

Chain Ar

40S ribosomal protein S4, X isoform

Chain Au

40S ribosomal protein S8

Chain Aw

40S ribosomal protein S11