IL_5T2C_238
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 5T2C|1|AA|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_238 not in the Motif Atlas
- Geometric match to IL_8AF0_002
- Geometric discrepancy: 0.2568
- The information below is about IL_8AF0_002
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
5T2C|1|AA|A|599
5T2C|1|AA|G|600
5T2C|1|AA|G|601
5T2C|1|AA|G|602
5T2C|1|AA|C|603
5T2C|1|AA|A|604
5T2C|1|AA|A|605
5T2C|1|AA|G|606
5T2C|1|AA|U|607
5T2C|1|AA|C|608
*
5T2C|1|AA|G|635
5T2C|1|AA|C|636
5T2C|1|AA|U|637
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AJ
- 40S ribosomal protein S2
- Chain AL
- 40S ribosomal protein S9
- Chain AT
- 40S ribosomal protein S30
- Chain Aq
- 40S ribosomal protein S3
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