IL_5T2C_241

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGAAAAAAUUAGAGUGUUCAAAGCAGG*CCUGGAUACCGCAGCUA

Length

45 nucleotides

Bulged bases

5T2C|1|AA|G|821, 5T2C|1|AA|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|U|805
5T2C|1|AA|U|806
5T2C|1|AA|G|807
5T2C|1|AA|A|808
5T2C|1|AA|A|809
5T2C|1|AA|A|810
5T2C|1|AA|A|811
5T2C|1|AA|A|812
5T2C|1|AA|A|813
5T2C|1|AA|U|814
5T2C|1|AA|U|815
5T2C|1|AA|A|816
5T2C|1|AA|G|817
5T2C|1|AA|A|818
5T2C|1|AA|G|819
5T2C|1|AA|U|820
5T2C|1|AA|G|821
5T2C|1|AA|U|822
5T2C|1|AA|U|823
5T2C|1|AA|C|824
5T2C|1|AA|A|825
5T2C|1|AA|A|826
5T2C|1|AA|A|827
5T2C|1|AA|G|828
5T2C|1|AA|C|829
5T2C|1|AA|A|830
5T2C|1|AA|G|831
5T2C|1|AA|G|832
*
5T2C|1|AA|C|842
5T2C|1|AA|C|843
5T2C|1|AA|U|844
5T2C|1|AA|G|845
5T2C|1|AA|G|846
5T2C|1|AA|A|847
5T2C|1|AA|U|848
5T2C|1|AA|A|849
5T2C|1|AA|C|850
5T2C|1|AA|C|851
5T2C|1|AA|G|852
5T2C|1|AA|C|853
5T2C|1|AA|A|854
5T2C|1|AA|G|855
5T2C|1|AA|C|856
5T2C|1|AA|U|857
5T2C|1|AA|A|858

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein S9

Chain AP

40S ribosomal protein S15a

Chain AQ

40S ribosomal protein S24

Chain Ar

40S ribosomal protein S4, X isoform

Chain Aw

40S ribosomal protein S11