IL_5T2C_242

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCGCGGUUC*GAACUGAGGCC

Length

23 nucleotides

Bulged bases

5T2C|1|AA|C|877, 5T2C|1|AA|C|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|873
5T2C|1|AA|G|874
5T2C|1|AA|A|875
5T2C|1|AA|C|876
5T2C|1|AA|C|877
5T2C|1|AA|G|878
5T2C|1|AA|C|879
5T2C|1|AA|G|880
5T2C|1|AA|G|881
5T2C|1|AA|U|882
5T2C|1|AA|U|883
5T2C|1|AA|C|884
*
5T2C|1|AA|G|902
5T2C|1|AA|A|903
5T2C|1|AA|A|904
5T2C|1|AA|C|905
5T2C|1|AA|U|906
5T2C|1|AA|G|907
5T2C|1|AA|A|908
5T2C|1|AA|G|909
5T2C|1|AA|G|910
5T2C|1|AA|C|911
5T2C|1|AA|C|912

Current chains

Chain AA

18S rRNA

Nearby chains

Chain At

40S ribosomal protein S7

Chain Aw

40S ribosomal protein S11

Chain L

60S ribosomal protein L19