IL_5T2C_243

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGA*UUUUC

Length

9 nucleotides

Bulged bases

5T2C|1|AA|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_243 not in the Motif Atlas

Homologous match to IL_8C3A_436

Geometric discrepancy: 0.4906

The information below is about IL_8C3A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5T2C|1|AA|G|923
5T2C|1|AA|G|924
5T2C|1|AA|G|925
5T2C|1|AA|A|926
*
5T2C|1|AA|U|1015
5T2C|1|AA|U|1016
5T2C|1|AA|U|1017
5T2C|1|AA|U|1018
5T2C|1|AA|C|1019

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain AP

40S ribosomal protein S15a

Chain AV

40S ribosomal protein S27