IL_5T2C_246

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAC*GUCUUUGG

Length

12 nucleotides

Bulged bases

5T2C|1|AA|C|1153, 5T2C|1|AA|U|1155, 5T2C|1|AA|G|1157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|C|1091
5T2C|1|AA|G|1092
5T2C|1|AA|A|1093
5T2C|1|AA|C|1094
*
5T2C|1|AA|G|1151
5T2C|1|AA|U|1152
5T2C|1|AA|C|1153
5T2C|1|AA|U|1154
5T2C|1|AA|U|1155
5T2C|1|AA|U|1156
5T2C|1|AA|G|1157
5T2C|1|AA|G|1158

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S23

Chain AJ

40S ribosomal protein S2

Chain AN

40S ribosomal protein S13

Chain AP

40S ribosomal protein S15a

Chain AV

40S ribosomal protein S27

Chain Aw

40S ribosomal protein S11