IL_5T2C_254

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCUACUACCGAU*AGAGGAAGUAAAAG

Length

27 nucleotides

Bulged bases

5T2C|1|AA|A|1824, 5T2C|1|AA|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|C|1708
5T2C|1|AA|G|1709
5T2C|1|AA|C|1710
5T2C|1|AA|U|1711
5T2C|1|AA|A|1712
5T2C|1|AA|C|1713
5T2C|1|AA|U|1714
5T2C|1|AA|A|1715
5T2C|1|AA|C|1716
5T2C|1|AA|C|1717
5T2C|1|AA|G|1718
5T2C|1|AA|A|1719
5T2C|1|AA|U|1720
*
5T2C|1|AA|A|1813
5T2C|1|AA|G|1814
5T2C|1|AA|A|1815
5T2C|1|AA|G|1816
5T2C|1|AA|G|1817
5T2C|1|AA|A|1818
5T2C|1|AA|A|1819
5T2C|1|AA|G|1820
5T2C|1|AA|U|1821
5T2C|1|AA|A|1822
5T2C|1|AA|A|1823
5T2C|1|AA|A|1824
5T2C|1|AA|A|1825
5T2C|1|AA|G|1826

Current chains

Chain AA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AD

40S ribosomal protein S23

Chain AT

40S ribosomal protein S30

Chain h

60S Ribosomal protein L41